This collection contains works by faculty from the Dartmouth Department of Biological Sciences.

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Submissions from 2021

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Intravital Imaging of Neocortical Heterotopia Reveals Aberrant Axonal Pathfinding and Myelination around Ectopic Neurons, Alice M. Li, Robert A. Hill, and Jaime Grutzendler

Events from 2019

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Panel 3: Contemporary Faculty Experiences, Bethany Moreton, Zaneta Thayer, Yui Hashimoto, Mary Lou Guerinot, and Desirée Garcia

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Systematic computational identification of prognostic cytogenetic markers in neuroblastoma, Chao Qin, Xiaoyan He, Yanding Zhao, Chun Yip Tong, Kenneth Y. Zhu, Yongqi Sun, and Chao Cheng

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Panel 1: The Pioneer Decades, Silvia Spitta, Jay Satterfield, Barry Scherr, Celia Chen, Caroline Cook, and Barbara Will

Submissions from 2018

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Spatial Heterogeneity in the Abundance and Fecundity of Arctic Mosquitoes, Lauren E. Culler, Matthew P. Ayres, and Ross A. Virginia

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Contact Prediction is Hardest for the Most Informative Contacts, but Improves with the Incorporation of Contact Potentials, Jack Holland, Qinxin Pan, and Gevorg Grigoryan

Submissions from 2017

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Road Ecology: Shifting Gears Toward Evolutionary Perspectives, Steven P. Brady and Jonathan L. Richardson

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The cyanobacterium Gloeotrichia echinulata increases the stability and network complexity of phytoplankton communities, Cayelan C. Carey, Bryan L. Brown, and Kathryn L. Cottingham

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Salting our Freshwater Lakes, Hilary A. Dugan, Sarah L. Bartlett, Samantha M. Burke, Jonathan P. Doubek, and Flora Krivak-Tetley

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Hearing on the Fly: The Effects of Wing Position on Noctuid Moth Hearing, Shira D. Gordon, Elizabeth Klenschi, and James F. C. Windmill

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Adaptor Protein 2 (Ap-2) Complex is Essential for Functional Axogenesis in Hippocampal Neurons, Jae Won Kyung, In Ha Cho, Sukmook Lee, Woo Keun Song, Timothy A. Ryan, Michael B. Hoppa, and Sung Hyun Kim

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Hunter-Gatherer Residential Mobility and the Marginal Value of Rainforest Patches, Vivek V. Venkataraman, Thomas S. Kraft, Nathaniel J. Dominy, and Kirk M. Endicott

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Dynamic Patterns of Expression for Genes Regulating Cytokinin Metabolism and Signaling during Rice Inflorescence Development, Maria V. Yamburenko, Joseph J. Kieber, and G. Eric Schaller

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Sequence statistics of tertiary structural motifs reflect protein stability, Fan Zheng and Gevorg Grigoryan

Submissions from 2016

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Temperature Sensitivity of Mineral Soil Carbon Decomposition in Shrub and Graminoid Tundra, West Greenland, Julia I. Bradley-Cook, Chelsea L. Petrenko, Andrew J. Friedland, and Ross A. Virginia

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Micron-Scale Plasma Membrane Curvature is Recognized by the Septin Cytoskeleton, Andrew A. Bridges, Maximilian S. Jentzsch, Patrick W. Oakes, Patricia Occhipinti, and Amy S. Gladfelter

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A Comprehensive Benchmarking Study of Protocols and Sequencing Platforms for 16s Rrna Community Profiling, Rosalinda D’Amore, Umer Zeeshan Ijaz, Melanie Schirmer, John G. Kenny, Richard Gregory, Alistair C. Darby, and Migun Shakya

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Experimenting with sex: four approaches to the genetics of sex reversal before 1950, Michael Dietrich

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Field Estimates of Parentage Reveal Sexually Antagonistic Selection on Body Size in a Population of Anolis Lizards, Mary C. Duryea, Patrick Bergeron, Zachary Clare-Salzler, and Ryan Calsbeek

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Alcohol Discrimination and Preferences in Two Species of Nectar-Feeding Primate, Samuel R. Gochman, Michael B. Brown, and Nathaniel J. Dominy

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Flow-Dependent Myosin Recruitment during Drosophila Cellularization Requires Zygotic Dunk Activity, Bing He, Adam Martin, and Eric Wieschaus

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A Heavy Metal P-Type ATPase OsHMA4 Prevents Copper Accumulation in Rice Grain, Xin-Yuan Huang, Fenglin Deng, Naoki Yamaji, Shannon R.M. Pinson, Miho Fujii-Kashino, John Danku, Alex Douglas, Mary Lou Guerinot, David Salt, and Jian Feng Ma

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Protein-Directed Self-Assembly of a Fullerene Crystal, Kook-Han Kim, Dong-Kyun Ko, Yong-Tae Kim, Nam Hyeong Kim, Jaydeep Paul, Shao-Qing Zhang, Christopher B. Murray, Rudresh Acharya, William F. DeGrado, Yong Ho Kim, and Gevorg Grigoryan

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Nonnative Forest Insects and Pathogens in the United States: Impacts and Policy Options, Gary M. Lovett, Marissa Weiss, Andrew M. Liebhold, Thomas P. Holmes, Brian Leung, Kathy F. Lambert, David A. Orwig, Faith T. Campbell, Jonathan Rosenthal, Deborah G. McCullough, Radka Wildova, and Matthew P. Ayres

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Tertiary Alphabet for the Observable Protein Structural Universe, Craig\ O. Mackenzie, Jianfu Zhou, and Gevorg Grigoryan

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Genomic analysis reveals hidden biodiversity within colugos, the sister group to primates, Victor C. Mason, Gang Li, Patrick Minx, Juergen Schmitz, Gennady Churakov, Liliya Doronina, Amanda D. Melin, and Nathaniel J. Dominy

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The Importance of Ambient Temperature to Growth and the Induction of Flowering, C. R. McClung, Ping Lou, Victor Hermand, and Jin A. Kim

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Dissection of Molecular Assembly Dynamics by Tracking Orientation and Position of Single Molecules in Live Cells, Shalin B. Mehta, Molly McQuilken, Patrick J. La Riviere, Patricia Occhipinti, Amitabh Verma, Rudolf Oldenbourg, Amy Gladfelter, and Tomomi Tani

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Interallelic Transcriptional Enhancement as an in Vivo Measure of Transvection in Drosophila melanogaster, Geoffrey P. Noble, Patrick J. Dolph, and Surachai Supattapone

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Oxidative Stress in Oocytes during Midprophase Induces Premature Loss of Cohesion and Chromosome Segregation Errors, Adrienne T. Perkins, Thomas M. Das, Lauren C. Panzera, and Sharon E. Bickel

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The Arabidopsis Auxin Receptor F-Box Proteins AFB4 and AFB5 Are Required for Response to the Synthetic Auxin Picloram, Michael J. Prigge, Kathleen Greenham, Yi Zhang, and Aaron Santner

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Characterization of the Cytokinin-Responsive Transcriptome in Rice, Tracy Raines, Ivory C. Blakley, Yu-Chang Tsai, Jennifer M. Worthen, José M. Franco-Zorrilla, Roberto Solano, and G. Eric Schaller

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Evolutionary Escalation: The Bat–Moth Arms Race, John M. Ratcliffe

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Horizontal Gene Acquisitions, Mobile Element Proliferation, and Genome Decay in the Host-Restricted Plant Pathogen Erwinia Tracheiphila, Lori R. Shapiro, Erin D. Scully, Timothy J. Straub, Jihye Park, Andrew G. Stephenson, Gwyn A. Beattie, Mark L. Gleason, Roberto Kolter, Miguel C. Coelho, Consuelo M. De Moraes, Mark C. Mescher, and Olga Zhaxybayeva

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Cytokinin Acts through the Auxin Influx Carrier AUX1 to Regulate Cell Elongation in the Root, Ian H. Street, Dennis Matthews, Maria Yamburkenko, and Ali Sorooshzadeh

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Presence of the Cyanotoxin Microcystin in Arctic Lakes of Southwestern Greenland, Jessica Trout-Haney, Zachary Wood, and Kathryn Cottingham

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Elevational Variation in Body-Temperature Response to Immune Challenge in a Lizard, Francisco Javier Zamora-Camacho, Senda Reguera, and Gregorio Moreno-Rueda

Submissions from 2015

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Ploidy Variation in Multinucleate Cells Changes Under Stress, Cori A. Anderson, Samantha Roberts, Huaiying Zhang, Courtney M. Kelly, Alexxy Kendall, ChangHwan Lee, John Gerstenberger, Aaron B. Koenig, Ruth Kabeche, and Amy S. Gladfelter

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Testing Dose-Dependent Effects of the Nectar Alkaloid Anabasine on Trypanosome Parasite Loads in Adult Bumble Bees, Winston E. Anthony, Evan C. Palmer-Young, Anne S. Leonard, Rebecca E. Irwin, and Lynn S. Adler

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Isoflurane Inhibits Synaptic Vesicle Exocytosis through Reduced Ca2+ Influx, not Ca2+-Exocytosis Coupling, Joel Baumgart, Zhen-Yu Zhou, Masato Hara, Daniel Cook, and Michael Hoppa

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Cytoskeletal Dynamics: A View from the Membrane, Magdalena Bezanilla, Amy S. Gladfelter, David R. Kovar, and Wei-Lih Lee

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Possible Synergistic Effects of Thymol and Nicotine Against Crithidia Bombi Parasitism in Bumble Bees, Olivia Masi Biller, Lynn S. Adler, Rebecca E. Irwin, Caitlin McAllister, and Evan C. Palmer-Young

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Estimated Exposure to Arsenic in Breastfed and Formula-Fed Infants in a United States Cohort, Courtney C. Carignan, Kathryn L. Cottingham, Brian P. Jackson, Shohreh F. Farzan, A Jay Gandolfi, Tracy Punshon, Carol L. Folt, and Margaret R. Karagas

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The diversification of developmental biology, Nathan Crowe, MIchael Dietrich, Beverly S. Alomepe, and Bay Lauris ByrneSim

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Biological Significance of Photoreceptor Photocycle Length: VIVID Photocycle Governs the Dynamic VIVID-White Collar Complex Pool Mediating Photo-adaptation and Response to Changes in Light Intensity, Arko Dasgupta, Chen-Hui Chen, ChangHwan Lee, Amy S. Gladfelter, Jay C. Dunlap, and Jennifer J. Loros

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Explaining the "Pulse of Protoplasm": the search for molecular mechanisms of protoplasmic streaming, Michael Dietrich

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A Shifting Terrain: A Brief History of the Adaptive Landscape, Michael Dietrich and Robert A. Skipper Jr.

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Sewall Wright's Adaptive Landscape: Philosophical Reflections on Heuristic Value, Michael Dietrich and Robert A. Skipper Jr.

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TRiP: Tracking Rhythms in Plants, an Automated Leaf Movement Analysis Program for Circadian Period Estimation, Kathleen Greenham, Ping Lou, Sara E. Remsen, Hany Farid, and C Robertson McClung

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Prediction of the Gene Expression in Normal Lung Tissue by the Gene Expression in Blood, Justin W. Halloran, Dakai Zhu, David C. Qian, Jinyoung Byun, Olga Y. Gorlova, Christopher I. I. Amos, and Ivan P. Gorlov

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Highly Constrained Intergenic Drosophila Ultraconserved Elements Are Candidate ncRNAs, Andrew D. Kern, Daniel A. Barbash, Joshua Chang Mell, Daniel Hupalo, and Amanda Jensen

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PolyQ-Dependent RNA–Protein Assemblies Control Symmetry Breaking, ChangHwan Lee, Patricia Occhipinti, and Amy S. Gladfelter

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The Bifunctional Alcohol and Aldehyde Dehydrogenase Gene, adhE, Is Necessary for Ethanol Production in Clostridium thermocellum and Thermoanaerobacterium saccharolyticum, Jonathan Lo, Tianyong Zheng, Shuen Hon, Daniel G. Olson, and Lee Lynd

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Deletion of nfnAB in Thermoanaerobacterium saccharolyticum and Its Effect on Metabolism, Jonathan Lo, Tianyong Zheng, Daniel G. Olson, Natalie Ruppertsberger, Shital Tripathi, Adam Guss, and Lee Lynd

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Bypassing Iron Storage in Endodermal Vacuoles Rescues the Iron Mobilization Defect in the Natural Resistance Associated-Macrophage Protein3natural Resistance Associated-Macrophage Protein4 Double Mutant, Viviane Mary, Magali Schnell Ramos, Cynthia Gillet, Amanda L. Socha, Jerome Giraudat, Astrid Agorio, Sylvain Merlot, Colin Clairet, Sun A. Kim, Tracy Punshon, Mary Lou Guerinot, and Sebastien Thomine

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Tumor Cell Targeting by Iron Oxide Nanoparticles is Dominated by Different Factors In Vitro versus In Vivo, Christian NDong, Jennifer A. Tate, Warren C. Kett, Jaya Batra, Eugene Demidenko, Lionel D. Lewis, P. Jack Hoopes, Tillmann U. Gerngross, and Karl E. Griswold

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Antibody-Mediated Targeting of Iron Oxide Nanoparticles to the Folate Receptor Alpha Increases Tumor Cell Association In Vitro and In Vivo, Christian Ndong, Seiko Toraya-Brown, Katsiaryna Kekalo, Ian Baker, Tillman U. Gerngross, Steven N. Fiering, and Karl E. Griswold

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The ARGOS Gene Family Functions in a Negative Feedback Loop to Desensitize Plants to Ethylene, Muneeza I. Rai, Xiaomin Wang, Derek M. Thibault, Hyo Jung Kim, Matthew M. Bombyk, Brad M. Binder, Samina N. Shakeel, and G. Eric Schaller

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The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference, James E. Tarver, Mario dos Reis, Siavash Mirarab, Raymond J. J. Moran, Sean Parker, Joseph E. O'Reilly, Benjamin L. King, Mary J. O'Connell, Robert J. Asher, Tandy Warnow, Kevin J. Peterson, Philip C.J. Donoghue, and Davide Pisani

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Coupling between Cytoplasmic Concentration Gradients through Local Control of Protein Mobility in the Caenorhabditis Elegans Zygote, Youjun Wu, Huaiying Zhang, and Erik E. Griffin

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Allelic Polymorphism of GIGANTEA is Responsible for Naturally Occurring Variation in Circadian Period in Brassica Rapa, Qiguang Xie, Ping Lou, Victor Hermand, and Rashid Aman

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Cofactor Specificity of the Bifunctional Alcohol and Aldehyde Dehydrogenase (AdhE) in Wild-Type and Mutant Clostridium thermocellum and Thermoanaerobacterium saccharolyticum, Tianyong Zheng, Daniel G. Olson, Liang Tian, Yannick J. Bomble, Michael Himmel, Jonathan Lo, Shuen Hon, A. Joe Shaw, Johannes P. van Dijken, and Lee Lynd

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Physiological Roles of Pyruvate Ferredoxin Oxidoreductase and Pyruvate Formate-Lyase in Thermoanaerobacterium Saccharolyticum Jw/Sl-Ys485, Jilai Zhou, Daniel G. Olson, Anthony A. Lanahan, Liang Tian, Sean Jean-Loup Murphy, Jonathan Lo, and Lee R. Lynd

Submissions from 2014

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Host Use Patterns by the European Woodwasp, Sirex noctilio, in Its Native and Invaded Range, Matthew P. Ayres, Rebeca Pena, Jeffrey A. Lombardo, and Maria J. Lombardero

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Septin Assemblies Form by Diffusion-Driven Annealing on Membranes, Andrew A. Bridges, Huaiying Zhang, Shalin B. Mehta, Patricia Occhipinti, Tomomi Tani, and Amy S. Gladfelter

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Benthic and Pelagic Pathways of Methylmercury Bioaccumulation in Estuarine Food Webs of the Northeast United States, Celia Y. Chen, Mark E. Borsuk, Deenie M. Bugge, and Terill Hollweg

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Publication trends in model organism research, Michael Dietrich, Rachel Ankeny, and Patrick Chen

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Recent Shifts in the Occurrence, Cause, and Magnitude of Animal Mass Mortality Events, Samuel B. Fey, Adam M. Siepielski, Sébastien Nusslé, Kristina Cervantes-Yoshida, Jason L. Hwan, Eric R. Huber, Maxfield J. Fey, Alessandro Catenazzi, and Stephanie M. Carlson

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Natural Selection on Thermal Performance in a Novel Thermal Environment, Michael L. Logan, Robert M. Cox, and Ryan Calsbeek

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Genome Wide Association Mapping of Grain Arsenic, Copper, Molybdenum and Zinc in Rice (Oryza sativa L.) Grown at Four International Field Sites, Gareth J. Norton, Alex Douglas, Brett Lahner, Elena Yakubova, Mary Lou Guerinot, Shannon R.M Pinson, Lee Tarpley, George C. Eizenga, Steve P. McGrath, and Fang-Jie Zhao

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Variation in Arabidopsis Flowering Time Associated with Cis-Regulatory Variation in CONSTANS, Ulises Rosas, Yu Mei, Qiguang Xie, Joshua A. Banta, Royce W. Zhou, Gabriela Seufferheld, Silvia Gerard, Lucy Chou, Naeha Bhambhra, Jennifer Deane Parks, Jonathan M. Flowers, C. Robertson McClung, Yoshie Hanzawa, and Michael D. Purugganan

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Nectar Yeasts in the Tall Larkspur Delphinium barbeyi (Ranunculaceae) and Effects on Components of Pollinator Foraging Behavior, Robert N. Schaeffer, Cody R. Phillips, M. Catherine Duryea, Jonathan Andicoechea, and Rebecca E. Irwin

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Mn-euvering Manganese: The Role of Transporter Gene Family Members in Manganese Uptake and Mobilization in Plants, Amanda L. Socha and Mary Lou Guerinot

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FAP206 is a Microtubule-Docking Adapter for Ciliary Radial Spoke 2 and Dynein c, Krishna K. Vasudevan, Kangkang Song, Lea M. Alford, Winfield Sale, Erin E. Dymek, Elizabeth F. Smith, Todd Hennessey, Ewa Joachimiak, Paulina Urbanska, Dorota Wloga, William Dentler, Daniela Nicastro, and Jacek Gaertig

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Rejuvenation of Meiotic Cohesion in Oocytes during Prophase I Is Required for Chiasma Maintenance and Accurate Chromosome Segregation, Katherine A. Weng, Charlotte A. Jeffreys, and Sharon E. Bickel

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Quantitative and Functional Characterization of the Hyper-Conserved Protein of Prochlorococcus and Marine Synechococcus, Caroline E. Whidden, Katrina G. DeZeeuw, Jackie K. Zorz, Andrew P. Joy, David A. Barnett, Milo S. Johnson, Olga Zhaxybayeva, and Amanda M. Cockshutt

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Linking the Green and Brown Worlds: the Prevalence and Effect of Multichannel Feeding in Food Webs, Elizabeth M. Wolkovich, Stefano Allesina, Kathryn L. Cottingham, John C. Moore, Stuart A. Sandin, and Claire de Mazancourt

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Collapse of an Ecological Network in Ancient Egypt, Justin Yeakel, Mathias Pires, Lars Rudolf, and Nathaniel Dominy

Submissions from 2013

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Identification of Cytokinin-Responsive Genes Using Microarray Meta-Analysis and RNA-Seq in Arabidopsis, Apurva Bhargava, Ivory Clabaugh, Jenn P. To, Bridey B. Maxwell, Yi-Hsuan Chiang, G. Eric Schaller, Ann Loraine, and Joseph J. Kieber

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Diet and Toenail Arsenic Concentrations in a New Hampshire Population with Arsenic-Containing Water, Kathryn L. Cottingham, Roxanne Karimi, Joann F. Gruber, M Scot Zens, Vicki Sayarath, Carol L. Folt, Tracy Punshon, J. Steven Morris, and Margaret R. Karagas

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R.A. Fisher and the Foundations of Statistical Biology, Michael Dietrich

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Experimental and Natural Warming Elevates Mercury Concentrations in Estuarine Fish, Jennifer A. Dijkstra, Kate L. Buckman, Darren Ward, David W. Evans, Michele Dionne, and Celia Y. Chen

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Tracking the Cellulolytic Activity of Clostridium Thermocellum Biofilms, Alexandru Dumitrache, Gideon M. Wolfaardt, David Allen, Steven N. Liss, and Lee R. Lynd

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Computational Discovery of Transcriptional Regulatory Modules in Fungal Ribosome Biogenesis Genes Reveals Novel Sequence and Function Patterns, Robert H. Gross and Viktor Martyanov

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Functional Characterization of Type-B Response Regulators in the Arabidopsis Cytokinin Response, Kristine Hill, Dennis E. Mathews, Hyo Jung Kim, Ian H. Street, Sarah L. Wildes, Yi-Hsuan Chiang, Michael G. Mason, Jose M. Alonso, Joseph R. Ecker, Joseph K. Kieber, and G. Eric Schaller

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Reconstruction of Family-Level Phylogenetic Relationships within Demospongiae (Porifera) Using Nuclear Encoded Housekeeping Genes, Malcolm S. Hill, April Hill, Jose Lopez, and Kevin J. Peterson

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Dirigent Domain-Containing Protein is Part of the Machinery Required for Formation of the Lignin-Based Casparian Strip in the Root, Prashant S. Hosmani, Takehiro Kamiya, John Danku, Sadaf Naseer, Niko Geldner, Mary Lou Guerinot, and David Salt

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Interactive Effects of Defoliation and Climate Change on Compensatory Growth of Silver Birch Seedlings, Liisa Huttunen, Matthew P. Ayres, Pekka Niemelä, Susanne Heiska, Riitta Tegelberg, Matti Rousi, and Seppo Kellomaki

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Subset of Heat-Shock Transcription Factors Required for the Early Response of Arabidopsis to Excess Light, Hou-Sung Jung, Peter A. Crisp, Gonzalo M. Estavillo, and Benjamin Cole

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SCFKMD Controls Cytokinin Signaling by Regulating the Degradation of Type-B Response Regulators, Hyo Jung Kim, Yi-Hsuan Chiang, Joseph J. Kieber, and G. Eric Schaller

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CATP-6, a C. elegans Ortholog of ATP13A2 PARK9, Positively Regulates GEM-1, an SLC16A Transporter, Eric J. Lambie, Pamela J. Tieu, Nadja Lebedeva, Diane L. Church, and Barbara Conradt

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Using Economic Instruments to Develop Effective Management of Invasive Species: Insights From a Bioeconomic Model, Shana M. McDermott, Rebecca E. Irwin, and Brad W. Taylor

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Elemental Concentrations in the Seed of Mutants and Natural Variants of Arabidopsis thaliana Grown under Varying Soil Conditions, Stephen C. McDowell, Garo Akmakjian, Chris Sladek, David Mendoza-Cozatl, Joe B. Morrissey, Nick Saini, Ron Mittler, Ivan Baxter, David E. Salt, John M. Ward, Julian I. Schroeder, Mary Lou Guerinot, and Jeffrey F. Harper

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MYB10 and MYB72 are Required for Growth under Iron-Limiting Conditions, Christine M. Palmer, Maria N. Hindt, Holger Schmidt, Stephan Clemens, and Mary Lou Guerinot

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Mechanisms of Signal Transduction by Ethylene: Overlapping and Non-Overlapping Signalling Roles in a Receptor Family, Samina N. Shakeel, Xiaomin Wang, Brad M. Binder, and G. Eric Schaller

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Functional Annotation and Comparative Analysis of a Zygopteran Transcriptome, Alexander G. Shanku, Mark A. McPeek, and Andrew D. Kern

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Low Mortality in Tall Tropical Trees, R. Q. Thomas, J. R. Kellner, D. B. Clark, and D. R. Peart

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Warm Springs, Early Lay Dates, and Double Brooding in a North American Migratory Songbird, the Black-Throated Blue Warbler, Andrea K. Townsend, T. Scott Sillett, Nina K. Lany, Sara A. Kaiser, Nicholas L. Rodenhouse, Michael S. Webster, and Richard T. Holmes

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Tree Climbing and Human Evolution, Vivek V. Venkataraman, Thomas S. Kraft, and Nathaniel J. Dominy

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An Interdisciplinary Approach to Documenting Knowledge: Plants and Their Uses in Southern Greenland, Simone S. Whitecloud and Lenore A. Grenoble