Submissions from 2014
Comparison of Magnetic Resonance Imaging-Compatible Optical Detectors for In-Magnet Tissue Spectroscopy: Photodiodes Versus Silicon Photomultipliers, Fadi El-Ghussein, Shudong Jiang, Brian W. Pogue, Keith D. Paulsen, and Brian W. Pogue
Hybrid Photomultiplier Tube and Photodiode Parallel Detection Array for Wideband Optical Spectroscopy of the Breast Guided by Magnetic Resonance Imaging, Fadi El-Ghussein, Michael A. Mastanduno, Shudong Jiang, Brian W. Pogue, and Keith D. Paulsen
Microwave Tomographic Imaging Utilizing Low-Profile, Rotating, Right Angle-Bent Monopole Antennas, N. R. Epstein, P. M. Meaney, and K. D. Paulsen
A Sustainable Design Method Acting As An Innovation Tool, Jeremy Faludi
Advances in Optics for Biotechnology, Medicine and Surgery, Maryann Fitzmaurice, Brian W. Pogue, Guillermo J. Tearney, and James W. Tunnell
A Review of the Pinned Photodiode for CCD and CMOS Image Sensors, Eric R. Fossum and Donald B. Hondongwa
Extraction of Intrinsic Fluorescence from Single Fiber Fluorescence Measurements on a Turbid Medium: Experimental Validation, U. A. Gamm, C. L. Hoy, F. van Leeuwen - van Zaane, H. J. C. M. Sterenborg, S. C. Kanick, D J. Robinson, and A. Amelink
Correspondence of Electroencephalography and Near-Infrared Spectroscopy Sensitivities to the Cerebral Cortex using a High-Density Layout, Paolo Giacometti and Solomon G. Diamond
Plastic Faulting in Saltwater Ice, Narayana Golding, Scott A. Snyder, Erland M. Schulson, and Carl E. Renshaw
Impact of Physical Properties and Accumulation Rate on Pore Close-Off in Layered Firn, S. A. Gregory, M. R. Albert, and I. Baker
The Exometabolome of Clostridium Thermocellum Reveals Overflow Metabolism at High Cellulose Loading, Evert K. Holwerda, Philip G. Thorne, Daniel G. Olson, Daniel Amador-Noguez, Nancy L. Engle, Timothy J. Tschaplinski, Johannes P. van Dijken, and Lee R. Lynd
Dual-Channel Red/Blue Fluorescence Dosimetry with Broadband Reflectance Spectroscopic Correction Measures Protoporphyrin IX Production during Photodynamic Therapy of Actinic Keratosis, Stephen Chad Kanick, Scott C. Davis, Yan Zhao, Tayyaba Hasan, Edward V. Maytin, Brian W. Pogue, and M Shane Chapman
Sub-Diffusive Scattering Parameter Maps Recovered Using Wide-Field High-Frequency Structured Light Imaging, Stephen C. Kanick, David M. McClatchy, Venkataramanan Krishnaswamy, Jonathan T. Elliott, Keith D. Paulsen, and Brian W. Pogue
Pixel-Based Absorption Correction for Dual-Tracer Fluorescence Imaging of Receptor Binding Potential, Stephen C. Kanick, Kenneth M. Tichauer, Jason Gunn, Kimberley S. Samkoe, and Brian W. Pogue
Climate Change and Forest Fires Synergistically Drive Widespread Melt Events of the Greenland Ice Sheet, Kaitlin M. Keegan, Mary R. Albert, Joseph R. McConnell, and Ian Baker
The Impact of Ice Layers on Gas Transport through Firn at the North Greenland Eemian Ice Drilling (Neem) Site, Greenland, K. Keegan, M. R. Albert, and I. Baker
Structured Light Scatteroscopy, Venkataramanan Krishnaswamy, Jonathan T. Elliott, David M. McClatchy, Richard J. Barth Jr., Wendy A. Wells, Brian W. Pogue, and Keith D. Paulsen
Comparative Efficiency and Driving Range of Light- and Heavy-Duty Vehicles Powered with Biomass Energy Stored in Liquid Fuels or Batteries, Mark Laser and Lee R. R. Lynd
Ionospheric Control of Magnetotail Reconnection, William Lotko, Ryan H. Smith, Binzheng Zhang, Jeremy E. Ouellette, Oliver J. Brambles, and John G. Lyon
Sensitivity of MRI-Guided Near-Infrared Spectroscopy Clinical Breast Exam Data and Its Impact on Diagnostic Performance, Michael A. Mastanduno, Junqing Xu, Fadi El-Ghussein, Shudong Jiang, Hong Yin, Yan Zhao, Kelly E. Michaelson, Ke Wang, Fang Ren, Brian W. Pogue, and Keith D. Paulsen
Anthropomorphic Breast Phantoms with Physiological Water, Lipid, and Hemoglobin Content for Near-Infrared Spectral Tomography, Kelly E. Michaelsen, Venkataramanan Krishnaswamy, Adele Shenoy, Emily Jordan, Brian W. Pogue, and Keith D. Paulsen
Preface to the 13th Physics and Chemistry of Ice Conference (PCI-2014), Rachel Obbard and Ian Baker
Global warming releases microplastic legacy frozen in Arctic Sea ice, Rachel Obbard, Saeed Sadri, Ying Qi Wong, Alexandra A. Khitun, Ian Baker, and Richard C. Thompson
T1 Magnetic Resonance Imaging Head Segmentation for Diffuse Optical Tomography and Electroencephalography, Katherine L. Perdue and Solomon G. Diamond
Predicting the Risk of Suicide by Analyzing the Text of Clinical Notes, Chris Poulin, Brian Shiner, Paul Thompson, Linas Vepstas, Yinong Young-Xu, Benjamin Goertzel, Bradley Watts, Laura Flashman, and Thomas McAllister
Spatial Frequency Analysis of Anisotropic Drug Transport in Tumor Samples, Stewart Russell, Kimberley S. Samkoe, Jason R. Gunn, P Jack Hoopes, Thienan A. Nguyen, Milo J. Russell, Robert R. Alfano, and Brian W. Pogue
Microbial Diversity of a Mediterranean Soil and Its Changes after Biotransformed Dry Olive Residue Amendment, José A. Siles, Caio T.C.C Rachid, Inmaculada Sampedro, Inmaculada García-Romera, and James M. Tiedje
Gene and Protein Sequence Optimization for High-Level Production of Fully Active and Aglycosylated Lysostaphin in Pichia Pastoris, Hongliang Zhao, Kristina Blazanovic, Yoonjoo Choi, Chris Bailey-Kellogg, and Karl E. Griswold
Submissions from 2013
Enhanced Phagocytic Activity of HIV-Specific Antibodies Correlates with Natural Production of Immunoglobulins with Skewed Affinity for FcγR2a and FcγR2b, Margaret E. Ackerman, Anne-Sophie Dugast, Elizabeth G. McAndrew, and Stephen Tsoukas
Impact of Treatment Response Metrics on Photodynamic Therapy Planning and Outcomes in a Three-Dimensional Model of Ovarian Cancer, Sriram Anbil, Imran Rizvi, Jonathan P. Celli, Nermina Alagic, Brian W. Pogue, and Tayyaba Hasan
Interactions of Peptide Triazole Thiols with Env gp120 Induce Irreversible Breakdown and Inactivation of HIV-1 Virions, Arangassery Bastian, Mark Contarino, Lauren D. Bailey, Rachna Aneja, Diogo Rodrigo Magalhaes Moreira, Kevin Freedman, Karyn McFadden, Caitlin Duffy, and Ali Emileh
Growing a Sustainable Biofuels Industry: Economics, Environmental Considerations, and the Role of the Conservation Reserve Program, Christopher M. Clark, Yolanda Lin, Britta G. Bierwagen, Laurence M. Eaton, Matthew H. Langholtz, Philip Morefield, Caroline E. Ridley, Laura Vimmerstedt, Steve Peterson, and Brian W. Bush
Functional Heterologous Expression of an Engineered Full Length Cipa from Clostridium Thermocellum in Thermoanaerobacterium Saccharolyticum, Devin H. Currie, Christopher D. Herring, Adam M. Guss, Daniel G. Olson, David A. Hogsett, and Lee R. Rynd
Dynamic Dual-Tracer MRI-Guided Fluorescence Tomography to Quantify Receptor Density In Vivo, Scott C. Davis, Kimberley S. Samkoe, Kenneth M. Tichauer, Kristian J. Sexton, Jason R. Gunn, Sophie J. Deharvengt, Tayyaba Hasan, and Brian W. Pogue
Effects of Spatial Pattern Scale of Brain Activity on the Sensitivity of DOT, fMRI, EEG and MEG, Solomon Gilbert Diamond and Katherine L. Perdue
Tracking the Cellulolytic Activity of Clostridium Thermocellum Biofilms, Alexandru Dumitrache, Gideon M. Wolfaardt, David Allen, Steven N. Liss, and Lee R. Lynd
Direct Identification of Breast Cancer Pathologies Using Blind Separation of Label-Free Localized Reflectance Measurements, Alma Eguizabal, Ashley M. Laughney, Pilar Beatriz García-Allende, Venkataramanan Krishnaswamy, Wendy A. Wells, Keith D. Paulsen, Brian W. Pogue, Jose M. Lopez-Higuera, and Olga M. Conde
Sustainable Design Education through a Self-Directed Online System, Jeremy Faludi and Adam Menter
White Light-Informed Optical Properties Improve Ultrasound-Guided Fluorescence Tomography of Photoactive Protoporphyrin IX, Brendan P. Flynn, Alisha V. DSouza, Stephen C. Kanick, Scott C. Davis, and Brian W. Pogue
Nonlinear optics in daily life, Elsa Garmire
Compliant Head Probe for Positioning Electroencephalography Electrodes and Near-Infrared Spectroscopy Optodes, Paolo Giacometti and Solomon G. Diamond
A GAMOS Plug-In for GEANT4 Based Monte Carlo Simulation of Radiation-Induced Light Transport in Biological Media, Adam K. Glaser, Stephen C. Kanick, Rongxiao Zhang, Pedro Arce, and Brian W. Pogue
Fast Segmentation and High-Quality Three-Dimensional Volume Mesh Creation from Medical Images for Diffuse Optical Tomography, Michael Jermyn, Hamid Ghadyani, Michael A. Mastanduno, Wes Turner, Scott C. Davis, Hamid Dehghani, and Brian W. Pogue
Pilot Study Assessment of Dynamic Vascular Changes in Breast Cancer with Near-Infrared Tomography from Prospectively Targeted Manipulations of Inspired End-Tidal Partial Pressure of Oxygen and Carbon Dioxide, Shudong Jiang, Brian W. Pogue, Kelly E. Michaelsen, Michael Jermyn, Michael A. Mastanduno, Tracy E. Frazee, Peter A. Kaufman, and Keith D. Paulsen
Scanning in Situ Spectroscopy Pplatform for Imaging Surgical Breast Tissue Specimens, Venkataramanan Krishnaswamy, Ashley M. Laughney, Wendy A. Wells, Keith D. Paulsen, and Brian W. Pogue
Alginate Lyase Exhibits Catalysis-Independent Biofilm Dispersion and Antibiotic Synergy, John W. Lamppa and Karl E. Griswold
System Analysis of Spatial Frequency Domain Imaging for Quantitative Mapping of Surgically Resected Breast Tissues, Ashley M. Laughney, Venkataramanan Krishnaswamy, Tyler B. Rice, and David J. Cuccia
Microwave Imaging for Neoadjuvant Chemotherapy Monitoring: Initial Clinical Experience, Paul M. Meaney, Peter A. Kaufman, Lori S. Muffly, Michael Click, Stephen P. Poplack, Wendy A. Wells, Gary N. Schwartz, Roberta M. di Florio-Alexander, Tor Tosteson, Zhongze Li, Shireen D. Geimer, Margaret W. Fanning, Tian Zhou, Neil R. Epstein, and Keith D. Paulsen
Role of the CipA Scaffoldin Protein in Cellulose Solubilization, as Determined by Targeted Gene Deletion and Complementation in Clostridium thermocellum, Daniel G. Olson, Richard J. Giannone, Robert L. Hettich, and Lee R. Lynd
Discontinuities and Alfvenic Fluctuations in the Solar Wind, G. Paschmann, S. Haaland, B. Sonnerup, and T. Knetter
Contrast Enhanced-Magnetic Resonance Imaging as a Surrogate to Map Verteporfin Delivery in Photodynamic Therapy, Kimberley S. Samkoe, Amber Bryant, Jason R. Gunn, Stephen P. Pereira, Tayyaba Hasan, and Brian W. Pogue
Fluorescent Affibody Peptide Penetration in Glioma Margin Is Superior to Full Antibody, Kristian Sexton, Kenneth Tichauer, Kimberley S. Samkoe, Jason Gunn, P. Jack Hoopes, and Brian W. Pogue
Continuous Correction of Differential Path Length Factor in Near-Infrared Spectroscopy, Tanveer Talukdar, Jason H. Moore, and Solomon G. Diamond
Bioengineered Lysozyme Reduces Bacterial Burden and Inflammation in a Murine Model of Mucoid Pseudomonas aeruginosa Lung Infection, Charlotte C. Teneback, Thomas C. Scanlon, Matthew J. Wargo, Jenna L. Bement, Karl E. Griswold, and Laurie W. Leclair
Dual-Tracer Background Subtraction Approach for Fluorescent Molecular Tomography, Kenneth M. Tichauer, Robert W. Holt, Fadi El-Ghussein, Scott C. Davis, Kimberly S. Samkoe, Jason R. Gunn, Frederic Leblond, and Brian W. Pogue
Modeling Biofuel Expansion Effects on Land Use Change Dynamics, Ethan Warner, Daniel Inman, Benjamin Kunstman, Brian Bush, Laura Vimmerstedt, and Steve Peterson
Real-time in vivo Cherenkoscopy Imaging During External Beam Radiation Therapy, Rongxiao Zhang, David J. Gladstone, Lesley A. Jarvis, Rendall R. Strawbridge, P Jack Hoopes, Oscar D. Friedman, Adam K. Glaser, and Brian W. Pogue
Atypical Glycolysis in Clostridium Thermocellum, Jilai Zhou, Daniel G. Olson, D. Aaron Argyros, Yu Deng, Walter M. van Gulik, Johannes P. van Dijken, and Lee R. Lynd
Submissions from 2012
Integrated Analysis of Hydrothermal Flow through Pretreatment, Veronique Archambault-Leger, Xiongjun Shao, and Lee R. Lynd
Quantitative Cherenkov Emission Spectroscopy for Tissue Oxygenation Assessment, Johan Axelsson, Adam K. Glaser, David J. Gladstone, and Brian W. Pogue
Multichannel Diffuse Optical Raman Tomography for Bone Characterization In Vivo: a Phantom Study, Jennifer-Lynn H. Demers, Scott C. Davis, Brian W. Pogue, and Michael D. Morris
Form and Function of Clostridium Thermocellum Biofilms, Alexandru Dumitrache, Gideon Wolfaardt, Grant Allen, Steven N. Liss, and Lee R. Lynd
Using Life Cycle Assessment Methods to Guide Architectural Decision-Making for Sustainable Prefabricated Modular Buildings, Jeremy Faludi, Michael Lepech, and George Loisos
Image-Based Quantification of Benzoporphyrin Derivative Uptake, Localization, and Photobleaching in 3D Tumor Models, for Optimization of PDT Parameters, Michael D. Glidden, Jonathan P. Celli, Iqbal Massodi, Imran Rizvi, Brian Pogue, and Tayyaba Hasan
Weighted multiple testing procedures for genomic studies, Jiang Gui, Tor Tosteson, and Mark Borsuk
Dcm Methylation is Detrimental to Plasmid Transformation in Clostridium Thermocellum, Adam M. Guss, Daniel G. Olson, Nicky C. Caiazza, and Lee R. Lynd
More about arc-polarized structures in the solar wind, S A. Haaland, B Sonnerup, and G Paschmann
Transition in the Fractal Geometry of Arctic Melt Ponds, C. Hohenegger, B. Alali, K. R. Steffen, D. K. Perovich, and K. M. Golden
Complete Genome Sequence of Clostridium clariflavum DSM 19732, Javier A. Izquierdo, Lynne Goodwin, Karen W. Davenport, and Hazuki Teshima
Scattering phase Function Spectrum Makes Reflectance Spectrum Measured from Intralipid phantoms and Tissue Sensitive to the Device Detection Geometry, S. C. Kanick, V. Krishnaswamy, U. A. Gamm, H. J.C.M Sterenborg, D. J. Robinson, A. Amelink, and B. W. Pogue
Spatial Frequency Domain Tomography of Protoporphyrin IX Fluorescence in Preclinical Glioma Models, Soren D. Konecky, Chris M. Owen, Tyler Rice, Pablo A. Valdés, Chris M. Owen, Pablo A. Valdes, David W. Roberts, Kolbein Kolste, Frederic Leblond, Keith D. Paulsen, and Brian C. Wilson
A Digital X-Ray Tomosynthesis Coupled Near Infrared Spectral Tomography System for Dual-Modality Breast Imaging, Venkataramanan Krishnaswamy, Kelly E. Michaelsen, Brian W. Pogue, Steven P. Poplack, Ian Shaw, Ken Defrietas, Ken Brooks, and Keith D. Paulsen
Minimum Cost of Transport in Asian Elephants: Do We Really Need a Bigger Elephant?, V. A. Langman, M. F. Rowe, T. J. Roberts, N. V. Langman, and C. R. Taylor
Automatic And Robust Calibration of Optical Detector Arrays for Biomedical Diffuse Optical Spectroscopy, Michael A. Mastanduno, Shudong Jiang, Roberta DiFlorio-Alexander, Brian W. Pogue, and Keith Paulsen
Formation and Characterization of Non-Growth States in Clostridium Thermocellum: Spores and L-Forms, Elizabeth B. Mearls, Javier A. Izquierdo, and Lee R. Lynd
New shortwave infrared albedo measurements for snow specific surface area retrieval, Benoit Montpetit, A Royer, A Langlois, P Cliché, A Roy, N Champollion, G Picard, F Domine, and Rachel Obbard
New Shortwave Infrared Albedo Measurements for Snow Specific Surface Area Retrieval, B. Montpetit, A. Royer, A. Langlois, P. Cliche, A. Roy, N. Champollion, G. Picard, F. Domine, and R. Obbard
Computational Design and Characterization of a Temperature-Sensitive Plasmid Replicon for Gram Positive Thermophiles, Daniel G. Olson and Lee R. Lynd
Characterization of Xylan Utilization and Discovery of a New Endoxylanase in Thermoanaerobacterium Saccharolyticum through Targeted Gene Deletions, Kara K. Podkaminer, Adam M. Guss, Heather L. Trajano, David A. Hogsett, and Lee R. Lynd
Ethanol and Anaerobic Conditions Reversibly Inhibit Commercial Cellulase Activity in Thermophilic Simultaneous Saccharification and Fermentation (tSSF), Kara K. Podkaminer, William R. Kenealy, Christopher D. Herring, David A. Hogsett, and Lee R. Lynd
Joint Diagonalization Applied to the Detection and Discrimination of Unexploded Ordnance, Fridon Shubitidze, Juan Pablo Fernández, Irma Shamatava, Benjamin Barrowes, and Kevin O’Neill
Improved Tumor Contrast Achieved by Single Time Point Dual-Reporter Fluorescence Imaging, Kenneth M. Tichauer, Kimberley S. Samkoe, Kristian J. Sexton, Jason R. Gunn, Tayyaba Hasan, and Brian W. Pogue
Quantitative, Spectrally-Resolved Intraoperative Fluorescence Imaging, Pablo A. Valdés, Frederic Leblond, Valerie L. Jacobs, Brian C. Wilson, Keith D. Paulsen, and David W. Roberts
Developing Unique Engineering Solutions to Improve Patient Safety, Bradley Watts, Douglas Van Citters, Brian Shiner, and Peter Mills
Submissions from 2011
High Ethanol Titers from Cellulose by Using Metabolically Engineered Thermophilic, Anaerobic Microbes, D. Aaron Argyros, Shital A. Tripathi, Trisha F. Barrett, Stephen R. Rogers, Lawrence F. Feinberg, Daniel G. Olson, Justin M. Foden, Bethany B. Miller, Lee R. Lynd, David A. Hogsett, and Nicky C. Caiazza
Mutant Alcohol Dehydrogenase Leads to Improved Ethanol Tolerance in Clostridium Thermocellum, Steven D. Brown, Adam M. Guss, Tatiana V. Karpinets, and Jerry M. Parks
Does the Normal Stress Parallel to the Sliding Plane Affect the Friction of Ice upon Ice?, Andrew L. Fortt and Erland M. Schulson
Resource Letter NO-1: Nonlinear Optics, Elsa Garmire
Crystal Structure of a Charge Engineered Human Lysozyme Having Enhanced Bactericidal Activity, Avinash Gill, Thomas C. Scanlon, Daniel C. Osipovitch, Dean R. Madden, and Karl E. Griswold
Current Review of In Nivo GBM Rodent Models: Emphasis on the CNS-1 Tumour Model, Valerie L. Jacobs, Pablo A. Valdes, William F. Hickey, and Joyce A. De Leo
Genetically Engineered Alginate Lyase-PEG Conjugates Exhibit Enhanced Catalytic Function and Reduced Immunoreactivity, John W. Lamppa, Margaret E. Ackerman, Jennifer I. Lai, Thomas C. Scanlon, and Karl E. Griswold
Dual-Channel Imaging System for Singlet Oxygen and Photosensitizer for PDT, Seonkyung Lee, Martin E. Isabelle, Kristin L. Gabally-Kinney, Brian W. Pogue, and Steven J. Davis
Protein-Protein Fusion Catalyzed by Sortase A, David A. Levary, Ranganath Parthasarathy, Eric T. Boder, and Margaret E. Ackerman
Approach to Accurately Measuring the Speed of Optical Precursors, Chuan-Feng Li, Zong-Quan Zhou, Heejeong Jeong, and Guang-Can Guo
Remote Positioning Optical Breast Magnetic Resonance Coil for Slice-Selection During Image-Guided Near-Infrared Spectroscopy of Breast Cancer, Michael A. Mastanduno, Shudong Jiang, Brian W. Pogue, Keith D. Paulsen, and Roberta DiFlorio-Alexander
A scanning electron microscope technique for identifying the mineralogy of dust in ice cores, Rachel Obbard, Ian Baker, and David Prior
A scanning electron microscope technique for identifying the mineralogy of dust in ice cores, Rachel Obbard, Ian Baker, and David Prior
Microstructural evolution in the fine-grained region of the Sip le Dome (Antarctica) ice core, Rachel Obbard, K E. Sieg, Ian Baker, D Meese, and G A. Catania
Using Borehole Logging and Electron Backscatter Diffraction to Orient an Ice Core from Upper Fremont Glacier, Wyoming, USA, R. W. Obbard, T. Cassano, K. Aho, G. Troderman, and I. Baker
Arctic sea-ice melt in 2008 and the role of solar heating, Donald K. Perovich, Jacqueline A. Richter-Menge, Kathleen F. Jones, and Bonnie Light